Quinta Don Jose Boutique Hotel
Reforma # 139 tlaquepaque area 1 866 629 3753, (http://www.quintadonjose.com/). located in tlaquepaque which along with tonala, make up the arts and crafts district of guadalajara. 15 rooms, bar, pool, small restaurant. pet friendly.
Many inexpensive hotels are available in the city center. If you plan to spend much time downtown, don't get a hotel farther away. It's much more convenient to be able to walk back than to need to find a bus back to a less central location e.g. the Minerva area.